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  1. Main Page (3,257 bytes)
    23: ...s]] — visualization of [[w:HDF5|HDF5]] data files
  2. H5utils (8,151 bytes)
    33: ... uninstall</code> to get rid of all the installed files.
    37: ...telling the compiler where to find the MPI header files, e.g. via:
    60: ...opy of this software and associated documentation files (the "Software"), to deal in the Software without...
    66: ...ing '''different''' license, since they link with files from the GPL-covered Vis5d:''
  3. MPB Introduction (14,329 bytes)
    34: ...riables and other advanced features. Having input files that were almost, but not quite, like a programmi...
  4. MPB Installation (12,031 bytes)
    115: ...e C compiler additional places to look for header files.
  5. MPB User Tutorial (35,772 bytes)
    22: ...o the file <code>foo.out</code>. (Some sample ctl files are provided for you in the <code>mpb-ctl/example...
    89: ... read by many visualization programs). (We output files in HDF5 format, where the filenames are suffixed ...
  6. MPB Data Analysis Tutorial (19,359 bytes)
    97: ...'ll run <code>mpb-data</code> on the field output files (named <code>e.k11.b*.z.tm.h5</code>), and then r...
    102: .../code> to specify the dataset name for all of the files at once. <code>man h5topng</code> for more inform...
  7. MPB User Reference (74,624 bytes)
    349: ... band while avoiding gratuitous numbers of output files. This can be accomplished via:
    583: ..., with a couple of minor exceptions. The same ctl files should work for both. Running a program that uses...
    587: ...nyway. A third difference is that the output HDF5 files (epsilon, fields, etcetera) from <code>mpb-mpi</c...
    601: ...pending upon which chunk it is in, so that output files will not overwrite one another and you can still ...
  8. MPB License and Copyright (2,544 bytes)
    18: ...hould note that Scheme control (<code>ctl</code>) files, written by the user (i.e. not containing code di...
    20: ...e code in this manual, as well as the example ctl files in the <code>mpb-ctl/examples/</code> directory, ...
  9. Libctl (2,188 bytes)
    2: ...uile]-based library implementing flexible control files for scientific simulations. It was written to sup...
  10. Libctl manual (2,224 bytes)
    2: ...Guile-based library implementing flexible control files for scientific simulations! This documentation is...
  11. Libctl Advanced User Experience (5,475 bytes)
    52: ... necessary to write a program to generate control files--now, the program can be in the control file itse...
  12. Libctl Introduction (2,867 bytes)
    2: ...s of the computation. Historically, these control files have typically consisted of long, inflexible coll...
    4: ... files end with ".ctl" and are referred to as ctl files). Thus, libctl is the ''Control Language Library'...
    13: ...o the control file without breaking older control files or increasing complexity.
    19: ...mmer, all headaches associated with reading input files are lifted&mdash;once an abstract specification i...
  13. Libctl Basic User Experience (7,615 bytes)
    2: At their most basic level, '''ctl''' files are simply a collection of values for parameters ...
    41: ''program'' ''ctl-files''
    43: ...se for the run. The result is as if all the ''ctl-files'' were concatenated, in sequence, into a single f...
  14. Libctl Developer Experience (16,625 bytes)
    6: ...unctions or variables that might be useful in ctl files for the program, and says which functions in your...
    202: ...ode>gen-ctl-io</code> commands above generate two files, <code>ctl-io.h</code> and <code>ctl-io.c</code>....
    204: ...outines that you are exporting, and loads control files from the command line. You should not need to mod...
    206: .../code> will then generate the <code>ctl-io</code> files and do everything else needed to compile your pro...
  15. Libctl License and Copyright (1,771 bytes)
    12: ... indicate this fact at the top of the file. ''All files fall under the GPL unless they expressly say othe...
    14: The files <code>src/integrator.c</code> and <code>src/cinte...
  16. Harminv installation (2,693 bytes)
    33: ...e C compiler additional places to look for header files.
  17. H5utils release notes (8,236 bytes)
    22: * Fixed failure to find colormap files in h5topng 1.11 (due to changes in autoconf 2.60)...
    87: ...to use a consistent color scale for all specified files.
    89: ...rogram to output VTK (Visualization ToolKit) data files.
    163: ...he compiler flags, making it easier to use header files in non-standard locations. (<code>CPPFLAGS</code>...
    182: ...xt</code> program for exporting 2d slices of HDF5 files to text suitable for importing into a spreadsheet...
  18. Libctl release notes (11,884 bytes)
    58: ...w supports separate generation of code and header files via <code>--code</code> and <code>--header</code>...
    60: ...ctl-io</code> can now export SWIG <code>.i</code> files for automatic type conversion in SWIG wrapper gen...
    146: ...</code> flags to the configure script (for header files in non-standard locations).
  19. MPB release notes (22,344 bytes)
    118: ...field output that caused subtly incorrect H-field files (only) for 3d problems when NOT using <code>mpbi<...
    138: ...tion output files. (This only affected the output files, not the frequency eigenvalues, etcetera.) Thanks...
    201: ...</code> flags to the configure script (for header files in non-standard locations).
  20. Meep Installation (13,544 bytes)
    14: ... and a "devel" package for [[w:Header file|header files]] and other things needed to compile software usi...
    141: ...libtool] &mdash; these are used to create the Makefiles and configure scripts, and to build shared librar...
  21. Meep License and Copyright (1,773 bytes)
    13: ...hould note that Scheme control (<code>ctl</code>) files, written by the user (i.e. not containing code di...
  22. Meep Tutorial (50,023 bytes)
    8: ...hdf5read.html Matlab], that supports reading HDF5 files.
    78: ... any case, we can now analyze and visualize these files with a wide variety of programs that support the ...
    156: ...lation&mdash;one can easily generate gigabytes of files, which is not only wasteful but is also slow. In...
    158: ...program that is actually used to create the image files). That is:
    164: ...ove command outputs zillions of <code>.png</code> files, and it is somewhat annoying to have them clutter...
  23. Meep Reference (109,261 bytes)
    50: ...ouble precision]], and by default its output HDF5 files are in the same format. However, by setting this...
    424: The output file names used by Meep, e.g. for HDF5 files, are automatically prefixed by the input variable...
    431: ... prefix, you can also specify that all the output files be written into a newly-created directory (if it ...
  24. Meep Tutorial/Band diagram, resonant modes, and transmission in a holey waveguide (32,880 bytes)
    19: ...-cavity.ctl</code> and <code>holey-wvg.ctl</code> files included with Meep, which contain the commands be...
  25. Meep FAQ (8,673 bytes)
    17: ...ile-devel</code> package that contains the header files and other things needed to compile programs using...
  26. Meep C-plus-plus Reference (6,915 bytes)
    48: ... (as of v 0.10.1) is organized into the following files in the src/ directory. For the libctl interface a...
  27. Meep release notes (15,091 bytes)
    156: ...tputs both <code>.png</code> and <code>.h5</code> files.
  28. Parallel Meep (6,216 bytes)
    10: ... &mdash; Meep has some hacks to let it write HDF5 files using serial I/O from multiple processes, one at ...
    22: ... MPI processes don't all have access to the local filesystem then you may need to make copies of your inp...
  29. NLopt release notes (13,986 bytes)
    78: ... C99-style mixed declaration and code in a couple files, so that code compiles in C89; thanks to Benoit S...
  30. NLopt FAQ (1,873 bytes)
    21: ... simplify life we plan to provide precompiled DLL files soon for Windows, cross-compiled using [[w:MinGW|...
  31. NLopt Installation (10,703 bytes)
    10: ...ommand, to install the NLopt libraries and header files via:
    14: ...lude</code>, as well manual pages and a few other files.
    28: ... tell the compiler where to find the NLopt header files (using <code>-I</code>) and libraries (using <cod...
    71: ... (along with help files and other <code>.m</code> files) are installed into the <code>MATLABPATH</code> p...
    81: .../oct/i486-pc-linux-gnu</code>), and the .m script files are installed into the systemwide <code>site/m</c...
  32. NLopt Deprecated API Reference (36,633 bytes)
    13: ''compiler'' ''...source/object files...'' -lnlopt -lm -o myprogram
    17: ...requires), must come ''after'' your source/object files. In general, the rule is that if ''A'' depends u...
    161: ===Constants and include files===
    169: ...options to specify search directories for include files, if you did not install NLopt in a standard locat...
  33. Cubature (Multi-dimensional integration) (19,124 bytes)
    30: ...code> file (along with a couple of private header files) that you can compile and link into your program ...
  34. NLopt Reference (29,913 bytes)
    24: ''compiler'' ''...source/object files...'' -lnlopt -lm -o myprogram
    28: ...requires), must come ''after'' your source/object files. In general, the rule is that if ''A'' depends u...
  35. NLopt C-plus-plus Reference (19,774 bytes)
    25: ''compiler'' ''...source/object files...'' -lnlopt -lm -o myprogram
  36. NLopt Matlab Reference (10,167 bytes)
    11: ...[w:MEX file]] callable from Matlab. All of these files must be placed somewhere in your Matlab path or i...
  37. NLopt Fortran Reference (19,582 bytes)
    13: ...lude</code> directory along with the C/C++ header files (by default, this is <code>/usr/local/include</co...
    17: ''compiler'' ''...source/object files...'' -lnlopt -lm -o myprogram
  38. NLopt on Windows (2,862 bytes)
    14: Alternatively, you can use the following files, provided by Benoit Scherrer (<code>benoitscherre...
    27: ...with your <code>.lib</code> and <code>.dll</code> files (from the <code>.zip</code>).
  39. Faddeeva Package (17,420 bytes)
    62: * [[w:C (programming language)|C]]: Download the files [http://ab-initio.mit.edu/Faddeeva.c http://ab-in...
    63: ...ode for compiled Matlab plugins ([[w:MEX file|MEX files]]) to interface all of the error functions above ...
    67: ...code> files, along with the <code>*.m</code> help files, into your [http://www.mathworks.com/help/matlab/...
    69: ...re/octave/doc/interpreter/Oct_002dFiles.html .oct files]) for all of the error functions above. (''Note:'...
    72: ...es); otherwise put the compiled <code>.oct</code> files somewhere in your [http://www.gnu.org/software/oc...
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