	CC -O2 -I../fftw -h pipeline1 -c setup.c
CC-65 CC: ERROR File = setup.c, Line = 1273
  A semicolon is expected at this point.

  {
  ^

CC-12 CC: WARNING File = setup.c, Line = 1294
  Parsing restarts here after previous syntax error.

        IonDyninfo templateiondyninfo;
                                     ^

CC-20 CC: ERROR File = setup.c, Line = 1296
  The identifier "templateparams" is undefined.

        print_params(templateparams,templateelecinfo,&templatebasis,
                     ^

CC-20 CC: ERROR File = setup.c, Line = 1296
  The identifier "templateelecinfo" is undefined.

        print_params(templateparams,templateelecinfo,&templatebasis,
                                    ^

CC-20 CC: ERROR File = setup.c, Line = 1296
  The identifier "templatebasis" is undefined.

        print_params(templateparams,templateelecinfo,&templatebasis,
                                                      ^

CC-20 CC: ERROR File = setup.c, Line = 1297
  The identifier "templateiondyninfo" is undefined.

  		   templateiondyninfo,templatecntrl);
  		   ^

CC-169 CC: ERROR File = setup.c, Line = 1300
  Expected a declaration.

      } else if ( MATCHn( argv[k],"-o",2 ) ) {
        ^

CC-12 CC: WARNING File = setup.c, Line = 1349
  Parsing restarts here after previous syntax error.

  		params.init_Y_filename);
  		                       ^

CC-77 CC: ERROR File = setup.c, Line = 1350
  The indicated declaration has no storage class or type specifier.

  	  fclose(testfilep);
  	  ^

CC-147 CC: ERROR File = setup.c, Line = 1350
  Declaration is incompatible with "int fclose(FILE *) C" (declared at line 99
          of "/usr/include/stdio.h").

  	  fclose(testfilep);
  	  ^

CC-20 CC: ERROR File = setup.c, Line = 1350
  The identifier "testfilep" is undefined.

  	  fclose(testfilep);
  	         ^

CC-169 CC: ERROR File = setup.c, Line = 1351
  Expected a declaration.

  	}
  	^

CC-12 CC: WARNING File = setup.c, Line = 1354
  Parsing restarts here after previous syntax error.

        dft_log("\n-------> Reading C from '%s'\n\n", params.init_Y_filename);
                                                                             ^

CC-77 CC: ERROR File = setup.c, Line = 1355
  The indicated declaration has no storage class or type specifier.

        dft_log_flush();
        ^

CC-147 CC: ERROR File = setup.c, Line = 1355
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

        dft_log_flush();
        ^

CC-65 CC: ERROR File = setup.c, Line = 1355
  A semicolon is expected at this point.

        dft_log_flush();
        ^

CC-77 CC: ERROR File = setup.c, Line = 1356
  The indicated declaration has no storage class or type specifier.

        read_column_bundle_array(params.init_Y_filename,
        ^

CC-147 CC: ERROR File = setup.c, Line = 1356
  Declaration is incompatible with
          "void read_column_bundle_array(char *, int, column_bundle *)"
          (declared at line 120 of "column_bundle.h").

        read_column_bundle_array(params.init_Y_filename,
        ^

CC-20 CC: ERROR File = setup.c, Line = 1356
  The identifier "params" is undefined.

        read_column_bundle_array(params.init_Y_filename,
                                 ^

CC-18 CC: ERROR File = setup.c, Line = 1356
  An unmatched left parentheses "(" appears in an expression.

        read_column_bundle_array(params.init_Y_filename,
                                                       ^

CC-169 CC: ERROR File = setup.c, Line = 1359
  Expected a declaration.

      }
      ^

CC-12 CC: WARNING File = setup.c, Line = 1373
  Parsing restarts here after previous syntax error.

    return 0;
            ^

CC-169 CC: ERROR File = setup.c, Line = 1374
  Expected a declaration.

  }
  ^

CC-12 CC: WARNING File = setup.c, Line = 1411
  Parsing restarts here after previous syntax error.

      dft_log("# ");
                   ^

CC-77 CC: ERROR File = setup.c, Line = 1412
  The indicated declaration has no storage class or type specifier.

    dft_log("job electronic-minimization\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1412
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("job electronic-minimization\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1412
  A semicolon is expected at this point.

    dft_log("job electronic-minimization\n");
    ^

CC-169 CC: ERROR File = setup.c, Line = 1413
  Expected a declaration.

    if ( !params.calculate_forces_flag ) 
    ^

CC-77 CC: ERROR File = setup.c, Line = 1415
  The indicated declaration has no storage class or type specifier.

    dft_log("job calculate-forces\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1415
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("job calculate-forces\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1415
  A semicolon is expected at this point.

    dft_log("job calculate-forces\n");
    ^

CC-169 CC: ERROR File = setup.c, Line = 1416
  Expected a declaration.

    if ( !params.ionic_dynamics_flag )
    ^

CC-77 CC: ERROR File = setup.c, Line = 1418
  The indicated declaration has no storage class or type specifier.

    dft_log("job ionic-dynamics verlet %g %g ",
    ^

CC-147 CC: ERROR File = setup.c, Line = 1418
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("job ionic-dynamics verlet %g %g ",
    ^

CC-65 CC: ERROR File = setup.c, Line = 1418
  A semicolon is expected at this point.

    dft_log("job ionic-dynamics verlet %g %g ",
    ^

CC-169 CC: ERROR File = setup.c, Line = 1420
  Expected a declaration.

    if ( MATCH(iondyninfo.ion_dyn_action,"new") ) {
    ^

CC-12 CC: WARNING File = setup.c, Line = 1426
  Parsing restarts here after previous syntax error.

      dft_log("# ");
                   ^

CC-77 CC: ERROR File = setup.c, Line = 1427
  The indicated declaration has no storage class or type specifier.

    dft_log("job ionic-relaxation\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1427
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("job ionic-relaxation\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1427
  A semicolon is expected at this point.

    dft_log("job ionic-relaxation\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1428
  The indicated declaration has no storage class or type specifier.

    dft_log("\n\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1428
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("\n\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1428
  A semicolon is expected at this point.

    dft_log("\n\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1431
  The indicated declaration has no storage class or type specifier.

    dft_log("# The lattice vectors are specified below:\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1431
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# The lattice vectors are specified below:\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1431
  A semicolon is expected at this point.

    dft_log("# The lattice vectors are specified below:\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1432
  The indicated declaration has no storage class or type specifier.

    dft_log("# a1 = 1st column, a2 = 2nd column, a3 = 3rd column\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1432
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# a1 = 1st column, a2 = 2nd column, a3 = 3rd column\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1432
  A semicolon is expected at this point.

    dft_log("# a1 = 1st column, a2 = 2nd column, a3 = 3rd column\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1433
  The indicated declaration has no storage class or type specifier.

    dft_log("lattice\t\\\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1433
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("lattice\t\\\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1433
  A semicolon is expected at this point.

    dft_log("lattice\t\\\n");
    ^

CC-169 CC: ERROR File = setup.c, Line = 1434
  Expected a declaration.

    for (i=0; i < 3; i++)
    ^

CC-12 CC: WARNING File = setup.c, Line = 1444
  Parsing restarts here after previous syntax error.

    dft_log("#\n# Possible scaling of the lattice vectors\n");
                                                             ^

CC-77 CC: ERROR File = setup.c, Line = 1445
  The indicated declaration has no storage class or type specifier.

    dft_log("latt-scale 1.0 1.0 1.0\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1445
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("latt-scale 1.0 1.0 1.0\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1445
  A semicolon is expected at this point.

    dft_log("latt-scale 1.0 1.0 1.0\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1446
  The indicated declaration has no storage class or type specifier.

    dft_log("#\n# Lattice symmetries:\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1446
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("#\n# Lattice symmetries:\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1446
  A semicolon is expected at this point.

    dft_log("#\n# Lattice symmetries:\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1447
  The indicated declaration has no storage class or type specifier.

    dft_log("# either none are done (latt-nosymmetries),\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1447
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# either none are done (latt-nosymmetries),\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1447
  A semicolon is expected at this point.

    dft_log("# either none are done (latt-nosymmetries),\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1448
  The indicated declaration has no storage class or type specifier.

    dft_log("# or symmetries can be specified manually (latt-symmetry) via\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1448
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# or symmetries can be specified manually (latt-symmetry) via\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1448
  A semicolon is expected at this point.

    dft_log("# or symmetries can be specified manually (latt-symmetry) via\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1449
  The indicated declaration has no storage class or type specifier.

    dft_log("# latt-symmetry <x11> <x12> ... <x33>  (symmetry matrix)\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1449
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# latt-symmetry <x11> <x12> ... <x33>  (symmetry matrix)\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1449
  A semicolon is expected at this point.

    dft_log("# latt-symmetry <x11> <x12> ... <x33>  (symmetry matrix)\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1450
  The indicated declaration has no storage class or type specifier.

    dft_log("# or they are done automatically if nothing is specified.\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1450
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# or they are done automatically if nothing is specified.\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1450
  A semicolon is expected at this point.

    dft_log("# or they are done automatically if nothing is specified.\n");
    ^

CC-169 CC: ERROR File = setup.c, Line = 1451
  Expected a declaration.

    if (ioninfo.nrot <= 1) {
    ^

CC-12 CC: WARNING File = setup.c, Line = 1464
  Parsing restarts here after previous syntax error.

    dft_log("\n\n");
                   ^

CC-77 CC: ERROR File = setup.c, Line = 1467
  The indicated declaration has no storage class or type specifier.

    dft_log("# Each species of ions is specified via:\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1467
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# Each species of ions is specified via:\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1467
  A semicolon is expected at this point.

    dft_log("# Each species of ions is specified via:\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1468
  The indicated declaration has no storage class or type specifier.

    dft_log("#\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1468
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("#\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1468
  A semicolon is expected at this point.

    dft_log("#\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1469
  The indicated declaration has no storage class or type specifier.

    dft_log("# ion-species <name> <Z> <mass> <potfile> <pulay_file>\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1469
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# ion-species <name> <Z> <mass> <potfile> <pulay_file>\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1469
  A semicolon is expected at this point.

    dft_log("# ion-species <name> <Z> <mass> <potfile> <pulay_file>\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1470
  The indicated declaration has no storage class or type specifier.

    dft_log("#\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1470
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("#\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1470
  A semicolon is expected at this point.

    dft_log("#\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1471
  The indicated declaration has no storage class or type specifier.

    dft_log("# where <name> is a string giving a name to the species,\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1471
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# where <name> is a string giving a name to the species,\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1471
  A semicolon is expected at this point.

    dft_log("# where <name> is a string giving a name to the species,\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1472
  The indicated declaration has no storage class or type specifier.

    dft_log("# <Z> is the valence charge (units of proton charges),\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1472
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# <Z> is the valence charge (units of proton charges),\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1472
  A semicolon is expected at this point.

    dft_log("# <Z> is the valence charge (units of proton charges),\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1473
  The indicated declaration has no storage class or type specifier.

    dft_log("# <mass> is the mass in amu (used only for dynamics),\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1473
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# <mass> is the mass in amu (used only for dynamics),\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1473
  A semicolon is expected at this point.

    dft_log("# <mass> is the mass in amu (used only for dynamics),\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1474
  The indicated declaration has no storage class or type specifier.

    dft_log("# <potfile> is a DFT++ .pot file describing the species,\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1474
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# <potfile> is a DFT++ .pot file describing the species,\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1474
  A semicolon is expected at this point.

    dft_log("# <potfile> is a DFT++ .pot file describing the species,\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1475
  The indicated declaration has no storage class or type specifier.

    dft_log("# and <pulay_file> is the pulay corrections file ('none' as\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1475
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# and <pulay_file> is the pulay corrections file ('none' as\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1475
  A semicolon is expected at this point.

    dft_log("# and <pulay_file> is the pulay corrections file ('none' as\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1476
  The indicated declaration has no storage class or type specifier.

    dft_log("# the pulay_file is ok: it just means no pulay corrections).\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1476
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("# the pulay_file is ok: it just means no pulay corrections).\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1476
  A semicolon is expected at this point.

    dft_log("# the pulay_file is ok: it just means no pulay corrections).\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1477
  The indicated declaration has no storage class or type specifier.

    dft_log("#\n");
    ^

CC-147 CC: ERROR File = setup.c, Line = 1477
  Declaration is incompatible with "Output *System::global_log" (declared at
          line 32 of "System.h").

    dft_log("#\n");
    ^

CC-65 CC: ERROR File = setup.c, Line = 1477
  A semicolon is expected at this point.

    dft_log("#\n");
    ^

CC-77 CC: ERROR File = setup.c, Line = 1478
  The indicated declaration has no storage class or type specifier.

    dft_log("# Ionic positions are specified via\n");
    ^

CC-1160 CC: ERROR File = setup.c, Line = 1478
  The compilation is aborted due to the number of errors.


101 errors detected in the compilation of "setup.c".
Make: "CC -O2 -I../fftw -h pipeline1 -c setup.c": Error code 1
cmd-2436 make: Stop.
